
Merja Heinäniemi
Deputy Head of Unit
Professor
Institute of Biomedicine, School of Medicine, Faculty of Health Sciences
[email protected] | +358 40 355 3842
Research groups
Projects
Publications
33/77 items-
Absolute copy number aware CNV calling of sub-megabase segments in ultra-low coverage single-cell DNA sequencing data
Kolbeinsdottir, Solrun; Zachariadis, Vasilios; Sommerauer, Christian; Lohi, Olli; Heinäniemi, Merja; Enge, Martin, 2025, Nucleic acids research, 53, 17, gkaf919. A1 Journal article (refereed), original research -
Dynamic evolution of TCF3‐PBX1 leukemias at the single‐cell level under chemotherapy pressure
Kusterer, Mira; Lahnalampi, Mari; Voutilainen, Minna; Brand, Alexandra; Pennisi, Sandra; Norona, Johana; Gentile, Gaia; Herzog, Heike; Greve, Gabriele; Lübbert, Michael; Sipola, Mikko; Kaartinen, Emma; Sankowski, Roman; Prinz, Marco; Killmer, Saskia; Lago, Marilyn S; Bengsch, Bertram; Cysar, Stepan R; Aumann, Konrad; Werner, Martin; Duyster, Justus; Lohi, Olli; Heinäniemi, Merja; Duque‐Afonso, Jesús, 2025, HemaSphere, 9, 2, e70071. A1 Journal article (refereed), original research -
Genomic determinants of therapy response in ETV6::RUNX1 leukemia
Oksa, Laura; Moisio, Sanni; Maqbool, Khurram; Kramer, Roger; Nikkilä, Atte; Jayasingha, Buddika; Mäkinen, Artturi; Foroughi-Asl, Hassan; Rounioja, Samuli; Suhonen, Janne; Krali, Olga; Voutilainen, Miikka; Lahnalampi, Mari; Vepsäläinen, Kaisa; Huang, Sui; Duque-Afonso, Jesus; Hauer, Julia; Nordlund, Jessica; Wirta, Valtteri; Lohi, Olli; Heinäniemi, Merja, 2025, Leukemia, 39, 9, 2125-2139. A1 Journal article (refereed), original research -
The Frequency but not the Phenotype of Circulating Peripheral T Helper Cells is Increased at Later Stages of Progression to Type 1 Diabetes
Schroderus, Anna Mari; Hanel, Andrea; Vandamme, Céline; Pitkänen, Viola; Rytkönen-Nissinen, Marja; Heinäniemi, Merja; Knip, Mikael; Veijola, Riitta; Toppari, Jorma; Ilonen, Jorma; Lempainen, Johanna; Kinnunen, Tuure, 2025, European journal of immunology, 55, 6, e51704. A1 Journal article (refereed), original research -
Trajectories from single-cells to PAX5-driven leukemia reveal PAX5-MYC interplay in vivo
Auer, Franziska; Morcos, Mina N F; Sipola, Mikko; Akhtar, Irfan; Moisio, Sanni; Vogt, Julia; Haag, Rebecca; Lahnalampi, Mari; Tuononen, Tiina J; Hanel, Andrea; Viitasalo, Anna; Friedrich, Ulrike A; Dahl, Andreas; Prexler, Carolin; Pandyra, Aleksandra A; Stepensky, Polina; Takagi, Masatoshi; Borkhardt, Arndt; Heinäniemi, Merja; Hauer, Julia, 2025, Leukemia, 39, 7, 1607-1626. A1 Journal article (refereed), original research -
An R Approach to Data Cleaning and Wrangling for Education Research
Kopra, Juho; Tikka, Santtu; Heinäniemi, Merja; López-Pernas, Sonsoles; Saqr, Mohammed, 2024, Saqr, Mohammed; López-Pernas, Sonsoles, Learning Analytics Methods and Tutorials: A Practical Guide Using R, 95-119. A3 Book section, Chapters in research books -
Comparison of high-throughput single-cell RNA-seq methods for ex vivo drug screening
Gezelius, Henrik; Enblad, Anna Pia; Lundmark, Anders; Åberg, Martin; Blom, Kristin; Rudfeldt, Jakob; Raine, Amanda; Harila, Arja; Rendo, Verónica; Heinäniemi, Merja; Andersson, Claes; Nordlund, Jessica, 2024, NAR genomics and bioinformatics, 6, 1, lqae001. A1 Journal article (refereed), original research -
Coronary Artery Disease Risk Variant Dampens the Expression of CALCRL by Reducing HSF Binding to Shear Stress Responsive Enhancer in Endothelial Cells in Vitro
Selvarajan, Ilakya; Kiema, Miika; Huang, Ru Ting; Li, Jin; Zhu, Jiayu; Pölönen, Petri; Örd, Tiit; Õunap, Kadri; Godiwala, Mehvash; Golebiewski, Anna Kathryn; Ravindran, Aarthi; Mäklin, Kiira; Toropainen, Anu; Stolze, Lindsey K; Arce, Maximiliano; Magnusson, Peetra U; White, Stephen; Romanoski, Casey E; Heinäniemi, Merja; Laakkonen, Johanna P; Fang, Yun; Kaikkonen, Minna U, 2024, Arteriosclerosis, thrombosis, and vascular biology, 44, 6, 1330-1345. A1 Journal article (refereed), original research -
Development of combination therapies with BTK inhibitors and dasatinib to treat CNS-infiltrating E2A-PBX1+/preBCR+ ALL
Gentile, Gaia; Poggio, Teresa; Catalano, Antonella; Voutilainen, Minna; Lahnalampi, Mari; Andrade-Martinez, Marta; Ma, Tobias; Sankowski, Roman; Goncharenko, Lina; Tholen, Stefan; Han, Kyuho; Morgens, David W.; Prinz, Marco; Lübbert, Michael; Engel, Sophia; Hartmann, Tanja Nicole; Cario, Gunnar; Schrappe, Martin; Lenk, Lennart; Stanulla, Martin; Duyster, Justus; Bronsert, Peter; Bassik, Michael C.; Cleary, Michael L.; Schilling, Oliver; Heinäniemi, Merja; Duque-Afonso, Jesús, 2024, Blood advances, 8, 11, 2846-2860. A1 Journal article (refereed), original research -
ECCB2024: The 23rd European Conference on Computational Biology
Kukkonen-Macchi, Anu; Hautaniemi, Sampsa; Heil, Katharina F; Heinäniemi, Merja; Jensen, Lars Juhl; Junttila, Sini; Käll, Lukas; Laiho, Asta; Maccallum, Peter; Nykter, Matti; Persson, Bengt; Suomi, Tomi; Van Den Bossche, Tim; Nyrönen, Tommi H; Elo, Laura L, 2024, Bioinformatics, 40, Supplement_2, ii1-ii3. B1 Non-refereed journal articles